Howdie Chunk23!
I'll leave the microstepping issue to Sandy, he's more qualified to discuss that.
Though that gondola is somewhat based on one of my designs, there are some changes to the design that compromise it a bit, in my opinion. Foremost, I don't like the weight of the gondola being so far below the pen. It leads to wobble -- the tail wags the dog too much.
My original design that Carlo based his gondola on (the one you printed) can be seen here: https://www.flickr.com/photos/91789568@N00/10636536794/in/album-72157629448247128/
Since that rendering was done, I switched to using a big metal washer that goes around the cylinder that holds the pen. Putting the weight where the pen is held is a better solution, I've found.
If your cord hangs parallel to the drawing board, your sprockets are the correct distance from the board.
If, with the motors off, your gondola hangs near the middle of the area in which you'll be drawing, or slightly higher than that, you have the weight balanced correctly. I suspect the washers I use are much lighter than a battery of that size, though.
Looking at your photo -- if your pen is down on the paper, I'd say its point is poking out too far from the "stabilizer" (the round plate). To stabilize wobble, the plate should be closer to the paper.
Hope those tips help a bit!
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